Book Chapters
Double Emulsion Flow Cytometry for Rapid Single Genome Detection
Cowell, T.W.; Han, H.-S.*
In: Li, P.C., Wu, A.R. (eds), Single-Cell Assays. Methods in Molecular Biology, Vol. 2689. Humana, New York, NY 2023. article
Pending Publications
MilliMap: interactive closed-loop analysis for spatial omics
Feng, Q.; Qian, S.B.; Wan, J.; Starr, Z.R.; Asif, S.; Han, H.-S.*
Submitted. article
Social evolution and absence of olfactory function in larval honey bees
Peng, T.; Chen, Z.; Ahmed, A.C.; Feng, Q.; Yeo, S.; Han, H.-S.; Robinson, G.E.*
Submitted. article
SpaceExpress: a method for comparative spatial transcriptomics based on intrinsic coordinate systems of tissues
Kim, Y. J.; Ojha, A.; Schrader, A..; Lee, J.; Wu, Z.; Traniello, I. M.; Robinson, G. E.*; Han, H.-S.*; Zhao, S. D.*; Sinha, S.*
Submitted. article
Unbiased, Cell-free Profiling of Single Influenza Genomes at High-throughput
Cowell, T. W.; Puryear, W.; Chen, C.-L.; Ding, R; Runstadler, J.; Han, H.-S.*
Submitted. article
Publications
RESCUE: recovery of unattributed expression patterns in spatial transcriptomics
Lee, Y.J.; Yeo, S.; Schrader, A.W.; Lee, J.; Traniello, I.M.; Asadian, M.; Ahmed, A.C.; Robinson, G.E.; Han, H.-S*.; Zhao, S.D*.
Nature Communications, 2026, article
Systematic investigation of double emulsion dewetting dynamics for the robust production of giant unilamellar vesicles
Jing, W.; Noh, H.; Tan, J.C.; Wu, N.C.; Han, H.-S.*
Lab on a Chip, 2026, article
Seq-Scope-eXpanded: spatial omics beyond optical resolution
Anacleto, A.; Cheng, W.; Feng, Q.; Park, A.; Cho, C.-S.; Hwang, Y.; Kim, Y.; Si, Y.; Hsu, J.-E.; Zhao, Q.; Zhao, X.; Kim, D.; Schrank, M.; Schrader, A.W.; Yeo, S.; Teles, R.; Modlin, R.L.; Plazyo, O.; Gudjonsson, J.E.; Kim, M.; Kim, C.H.; Han, H.-S.*; Kang, H.M.*; Lee, J.H.*
Nature Communications, 2026, 17, 2564. article
Shear-Induced CROSS (Cellular RedOx Spreading Shield) Assembly Sustains Neurotrophic Extracellular Vesicle Production for Functional Neural Networks
Miller, R. C.; Kang, S.; Wang, J.; Huang, K.-Y.; Lee, J.; Kim, Y. J.; Han, H.-S.*; Kong, H.*
Advanced Functional Materials, 2025, 36(27), e22252. article
Single-step synthesis of mesoporous vinyl polymers via hierarchical assembly of stereocontrolled chains
Kim, S. H.; Jo J.; Park, T. W.; Chung, Y. M.; Song, H. H.; Lee, S. W.; Park, Y.; Moon, W. K.; Lee, E.J; Hwang, G. W.; Jung, M. H.; Hong, W. K.; Sohn ,D.; Lee, Y.; Yoon, K. B.; Shin, S. H.; Han, H.-S.*; Han, Y. K.*
Small, 2025, 21(51), e09954. article
Drop-by-drop Addition of Reagents to a Double Emulsion
Cowell, T. W.; Jing W.; Noh, H.; Han H.-S.*
Small, 2024, 20(46), e2404121. article
Targeted whole-genome recovery of single viral species in a complex environmental sample
Chen, L.; Chen, A.; Zhang, X. D.; T. Robles, M. S.; Han, H.-S.; Xiao, Y. Xiao, G.; Pipas, J. M.; Weitz, D. A.;
PNAS, 2024, 121(31), e2404727121. article
Organoborane Se and Te precursors for controlled modulation of reactivity in nanomaterial synthesis
Park, J.; Han, H.-S.
ACS Nano, 2024, 18, 24, 15487–15498. article
Intracellular Spatial Transcriptomic Analysis Toolkit (InSTAnT)
Kumar, A.; Schrader, A. W.; Boroojeny, A. E.; Asadian, A.; Lee, J.; Song, Y. J.; Zhao, S. D.*; Han, H.-S.*; Sinha, S.*
Nature Communication, 2024, 15, 7794. article
Spot-Based Global Registration for Sub-pixel Stitching of Single-Molecule Resolution Images for Tissue-Scale Spatial Transcriptomics
Yeo, S.; Schrader, A. W.; Lee, J.; Asadian, A.; Han, H.-S.*
Analytical Chemistry, 2024, 96(17), 6517-6522. article
Versatile Pre-Polymer Platform for Controlled Tailoring of Quantum Dot Surface Properties
Lee, J.; Soares, G.; Doty, C.; Park, J.; Hovey, J.; Schrader, A. W.; Han, H.-S.*
ACS Appl. Mater. Interfaces, 2024, 16, 12, 15202-15214 .article
Multiplexed Electrical Detection of Whole Viruses from Plasma in a Microfluidic Platform
Jankelow, A.; Chen, C.; Cowell, T. W.; Monteros, J. E.; Bian, Z.; Kindratenko, V.; Han H.-S.; Valera, E.; Bashir, R.
Analyst, 2024, Advance online publication. article
Spectroscopic Investigation of Phosphorus Mineralization as Affected by the Calcite-Water Interfacial Chemistry
Chen, A.; Zhu, L.; Han H.-S.; Arai, Y.
Environ. Sci. Technol. 2023, 57(43), 16606–16615. article
Electrochemical Point-of-Care Devices for the Diagnosis of Sepsis
Valera, E.; Kindratenko, V.; Jankelow, A.; Heredia, J.; Cowell, T. W.; Chen, C.-L.; Han, H.-S.; Bashir, R.*
Curr. Opin. Electrochem, 2023, 39, 101300. article
In-drop thermal cycling of microcrystal assembly for senescence control (MASC) with minimal variation in efficacy
Miller, R. C.; Lee, J.; Kim, Y.; Han, H.-S.*; Kong, H.*
Adv. Funct. Mater, 2023, 33(37), 2302232. article
Extending the bioavailability of hydrophilic antioxidants for metal ion detoxification via recrystallization with polysaccharide dopamine
Miller, R.; Kim, Y.; Park, C. G.; Torres, C.; Kim, B.; Lee, J.; Flaherty, D.; Han, H.-S.; Kim, Y. J.*; Kong, H.*
ACS Appl. Mater. Interfaces, 2022, 14, 35, 39759–39774. article
Multiphoton phosphorescence quenching microscopy reveals kinetics of tumor oxygenation during anti-angiogenesis and angiotensin signaling inhibition
Martin, J.; Lanning, R.; Chauhan, V.; Martin, M.; Mousa, A.; Kamoun, W.; Han, H.-S.; Lee, H.; Stylianopoulos, T.; Bawendi, M.; Duda, D.; Brown, E.; Padera, T.; Fukumura, D.; Jain, R.
Clinical Cancer Research, 2022, 28, 14, 3076-3090. article
Droplet Microfluidics for High-Resolution Virology
Jing, W.; Han, H.-S.*
Anal. Chem. (invited Perspective), 2022, 94, 23, 8085–8100. article
Simplified, Shear Induced Generation of Double Emulsions for Robust Compartmentalization during Single Genome Analysis
Cowell, T. W.; Dobria, A.; Han, H.-S.*
Biorxiv 2021/469484. ACS Appl. Mater. Interfaces, 2022, 14, 18, 20528–20537. article
Inertial Self-Assembly Dynamics of Interacting Droplet Ensembles in Microfluidic Flows
Jing, W.; Han, H.-S.*
Analytical Chemistry, 2022, 94, 9, 3978-3986. article
Nanocrystal Precursor Incorporating Separated Reaction Mechanisms for Nucleation and Growth to Unleash the Potential of Heat-up Synthesis
Park, J.; Jayaraman, A. R.; Wang, X.; Zhao, J.; Han, H.-S.*
ACS Nano, 2020, 14, 9, 11579-11593. article
Controllable modulation of precursor reactivity using chemical additives for systematic synthesis of high-quality quantum dots
Park, J.; Jayaraman, A. R.; Schrader, A. W.; Hwang, G. W.; Han, H.-S.*
Nature Comm, 2020, 11, 5748. article (selected as Editor’s highlight, featured article in Materials Science and Chemistry)
Rapid, Multiplexed Electrical Detection of Biomolecules using Electrically Distinct Hydrogel Beads
Cowell, T. W.; Valera, E.; Jankelow, A.; Park, J.; Schrader, A. W.; Ding, R.; Berger, J; Bashir, R.; Han, H.-S.*
Lab Chip. 2020, 20, 2274-2283. article (selected as the inside front cover article)
Whole-Genome Sequencing of a Single Viral Species from a Highly Heterogeneous Sample
Han H.-S.; Cantalupo P. G.; Rotem A.; Cockrell S. K.; Carbonnaux M.; Pipas J. M.; Weitz D. A.
Chem. Int. Ed. 2015, 54, 13985–13988. article
* Above article was selected as a “Hot paper”.
Quantum Dot/Antibody Conjugates for In vivo Cytometric Imaging in Mice
Han H.-S.; Niemeyer E.; Huang Y.; Kamoun W. S.; Martin J. D.; Bhaumik J.; Chen Y.; Roberge S.; Cui J.; Martin M. R.; Fukumura D.; Jain R. K.; Bawendi M. G.; Duda D. G.
Proc. Natl. Acad. Sci. U.S.A. 2015, 112, 1350–1355. article
Compact High-Quality CdSe-CdS Core-Shell Nanocrystals with Narrow Emission Linewidths and Suppressed blinking
Chen O.; Zhao J; Chauhan V. P.; Cui J.; Wong C.; Harris D. K.; Wei H.; Han H.-S.; Fukumura D.; Jain R. K.; Bawendi M. G.
Nat. Mater. 2013, 12, 445–451. article
Controlled Placement of Colloidal Quantum Dots in sub-15-nm Clusters
Manfrinato V. R.; Wanger D.D.; Strasfeld D. B.; Han H.-S.; Marsili F.; Arrieta J. P.;Mentzel T. S.; Bawendi M. G.; Berggren K. K.
Nanotechnology. 2013, 24, 125302. article
Spatial Charge Configuration Regulates Nanoparticle Transport and Binding Behavior in vivo
Han H.-S.; Martin J.; Lee J.; Harris D. K.; Fukumura D.; Jain R. K.; Bawendi M. G.
Angew. Chem. Int. Ed. 2013, 52, 1414–1419. article
* Above article was highlighted in Nat. Mater. 2013, 12, 91.
Compact Zwitterion-Coated Iron Oxide Nanoparticles for Biological Applications
Wei H.; Insin N.; Lee J.; Han H.-S.; Cordero J. M.; Liu W.; Bawendi M. G.
Nano Lett. 2012, 12, 22–25. article
Synthesis of Cadmium Arsenide Quantum Dots Luminescent in the Infrared
Harris D. K.; Allen P. M.; Han H.-S.; Walker B. J.; Lee J.; Bawendi M. G.
J. Am. Chem. Soc. 2011, 133, 4676–4679. article
Using Nanowires to Extract Excitons from a Nanocrystal Solid
Dorn A.; Strasfeld D. B.; Harris D. K.; Han H.-S.; Bawendi M. G.
ACS Nano. 2011, 5, 9028–9033. article
Development of a Bioorthogonal and Highly Efficient Conjugation Method for Quantum Dots using Tetrazine-Norbornene Cycloaddition
Han H.-S.; Devaraj N. K.; Lee J.; Hilderbrand S. A.; Weissleder R.; Bawendi M. G.
J. Am. Chem. Soc. 2010, 132, 7838–7839. article
Surface-Structure-Regulated Cell-Membrane Penetration by Monolayer-Protected Nanoparticles
Verma A.; Uzun O.; Hu Y.; Hu Y.; Han H.-S.; Watson N.; Chen S.; Irvine D. J.; Stellacci F.
Nat. Mater. 2008, 7, 588–598. article